Publikationen

Recent publications

 

• Marquardt, P., Werthmann, B., Rätzel, V., Haas, M., Marwan, W. 2021. Quantifying 35 transcripts in a single tube: model-based calibration of the GeXP multiplex RT-PCR assay. BMC Biotechnology 21:29.
  
  

• Pretschner, A., Pabel, S., Haas, M., Heiner, M., Marwan, W. 2021. Regulatory Dynamics of Cell Differentiation Revealed by True Time Series From Multinucleate Single Cells. Frontiers in Genetics, Systems Biology.

• Rätzel, V., Werthmann, B., Haas, M., Strube, J. and Marwan, W. 2020. Disentangling a Complex Response in Cell Reprogramming and Probing the Waddington Landscape by Automatic Construction of Petri Nets. Biosystems 189, Elsevier https://doi.org/10.1016/j.biosystems.2019.104092

• Werthmann, B. and Marwan, W. 2017. Developmental switching in Physarum polycephalum: Petri net analysis of single cell trajectories of gene expression indicates responsiveness and genetic plasticity of the Waddington quasipotential landscape. J. Phys. D: Appl. Phys. 50 (2017) 464003 (18pp)

• Glöckner, G., Marwan, W. 2017. Transcriptome reprogramming during developmental switching in Physarum polycephalum involves extensive remodeling of intracellular signaling networks. Scientific Reports 7: 12304.

• Schaap, P. et al. 2016. The Physarum polycephalum genome reveals extensive use of prokaryotic two-component and metazoan-type tyrosine kinase signaling. Genome Biology and Evolution 8: 109-125.

• Blätke, M.A.,  Heiner, M. and Marwan, W. 2015. BioModel Engineering with Petri Nets. In: Algebraic and Discrete Mathematical Methods for Modern Biology (Ed. Robeva), Academic Press, Burlington. pp. 141-192.

• Rätzel, V., Marwan, W. 2015. Gene expression kinetics in individual plasmodial cells reveal alternative programs of differential regulation during commitment and differentiation. Develop Growth Differ 57, 408-420.