Publications

Recent publications

• Schaap P. et al. 2016. The Physarum polycephalum genome reveals extensive use of prokaryotic two-component and metazoan-type tyrosine kinase signaling. In: Genome biology and evolution : GBE. - Oxford : Oxford Univ. Press, Bd. 8.2016, 1, S. 109-125
• Blätke M.A., M. Heiner and W. Marwan. 2015. BioModel Engineering with Petri Nets. Algebraic and Discrete Mathematical Methods for Modern Biology (ed. R Robeva), pp. 141-192. Academic Press, Burlington.
• Rätzel V.,W. Marwan. 2015. Gene expression kinetics in individual plasmodial cells reveal alternative programs of differential regulation during commitment and differentiation. Develop Growth Differ 57: 408-420.
• Soldatova, L.N., D. Nadis, R.D. King, P.S. Basu, E. Haddi, V. Baumle, N.J. Saunders, W. Marwan, and B.B. Rudkin. 2014. EXACT2: the semantics of biomedical protocols. BMC Bioinformatics 15, no. Suppl 14: S5. 
• Blätke M.A., C. Rohr, M. Heiner and W. Marwan. 2014. A Petri-Net-Based Framework for Biomodel Engineering. In Large-Scale Networks in Engineering and Life Sciences (pp. 317-366). Springer International Publishing.
• Liu, F., M. Blätke, M. Heiner and M. Yang. 2014. Modelling and simulating reaction diffusion systems using coloured Petri nets. Computers in biology and medicine, 53, 297-308. 
• Favre, C.F., W. Marwan, and A. K. Wagler. 2014. Integrating prior knowledge in automatic network reconstruction. In Proc. of the 5th International Workshop on Biological Processes & Petri Nets (BioPPN), satellite event of Petri Nets 2014, CEUR-WS.org, CEUR Workshop Proceedings, volume 1159, pages 145-59.